This function calculates a genomic relationship matrix following the method decribed by Yang et al (2010)
Arguments
- geno
a data frame containing allele frequency data generated from stamppConvert, or a genlight object containing genotype data, individual IDs, population IDs and ploidy levels
Value
An object of class matrix which contains the genomic relationship values between each individual
References
Yang J, Benyamin B, McEvoy BP, et al (2010) Common SNPs explain a large proportion of the heritability for human height. Nat Genet 42, 565-569. <doi:10.1038/ng.608>
Examples
# import genotype data and convert to allele frequecies
data(potato.mini, package="StAMPP")
potato.freq <- stamppConvert(potato.mini, "r")
# Calculate genomic relationship values between each individual
potato.fst <- stamppGmatrix(potato.freq)